GATK current version downloading fails

Question

[shuksi1984]

I am trying to download GATK latest version from the given link: https://software.broadinstitute.org/gatk/download/index

I have been trying multiple times, but it fails after sumtime. There is no internet issue, as I have downloaded the entire fastq.gz (~6GB) file for RNAseq.

My desktop configuration is: HDD~500GB RAM-7.7GB OS-Ubuntu 16.04LTS, 64bit

[h.mon]

Use wget --continue *link*.

Answer 1

[zhenyisong]

you can try miniconda to mange your software version. GATK4 has already lifted its restriction.

conda install -c bioconda gatk

[shuksi1984]

Thanks, but tried the other way.

1.Downloaded the zipped file in my local machine through web. 2.Copied the zipped file in server through SCP. 3.Unzipped and installed.

It worked...!