How to extract from a fasta file, all the protein sequences that have more than 800 aa?
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6.6 years ago
ayixon • 0

How to extract from a file all the protein sequences that have more than 800 aa using linux terminal?

sequence Assembly • 1.5k views
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Solved. Thank you very much. The perl script worked fine.

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6.6 years ago

For future reference, to filter a multifasta file for sequences with more than 800 aa,

$ seqkit seq -m 800 test.fa

-m = minimum length of the sequence to be printed

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