I am a new hand in the data analysis. Now I have the alignment results in .txt file, which includes subject sequence, pattern sequence, and score, as below:
subject: [1] AACGAACGCTGGCGGCATGCCTAACACATGCAAGT...GAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGC
score: 3031.58
Global PairwiseAlignmentsSingleSubject (1 of 1)
pattern: [1] AACGAACGCTGGCGGCATGCCTAACACATGCAAGT...GAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGC
subject: [1] AATGAACGCTGGCGGCATGCCTAACACATGCAAGT...GAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGC
score: 2502.837
I plan to sort the score value for each aligned sequence and save the sorted scores in .txt files. I tried sort()
, order()
in R but didn't work. Could you please give me some suggestions or advice?
Could you update your post with expected output?