Entering edit mode
6.5 years ago
niu.shengyong
▴
70
I use BBSplit.sh to run my analysis like this:
./bbmap/bbsplit.sh in1=R1_001_bc_prefix.fastq.gz in2=R2_001_bc_prefix.fastq.gz ref=hg19.fa,mm10.fa basename=out_%.bam threads=4 ambig2=best
I want to know my mapping quality and statistics. How could I access the result? Thanks!
Simon
