Entering edit mode
6.6 years ago
marongiu.luigi
▴
730
Dear all,
I have lanched EMBOSS' msbar to generate mutations in a genome in the ration of 3.6 million mutations in 42 million bases with the command:
cat <input> | msbar -filter -count 3600000 -point 1 > <output>
The process seems to be running but it has been running for over 8 hours, occupies about 150-180 Mb of memory but does neither reads nor write data:
$ pidstat -r -u -p 27115
Linux 4.15.0-20-generic 09/05/18 _x86_64_ (16 CPU)
16:56:09 UID PID %usr %system %guest %wait %CPU CPU Command
16:56:09 1000 27115 20.04 8.62 0.00 0.09 28.66 5 msbar
16:56:09 UID PID minflt/s majflt/s VSZ RSS %MEM Command
16:56:09 1000 27115 52497.86 0.00 361348 200704 0.41 msbar
Shall I just wait or has the program stalled completely?
Thank you
I doubt anyone can offer a useful answer.
Wait and watch
is the best I can come up with.