EMBOSS msbar stucked
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6.6 years ago

Dear all,

I have lanched EMBOSS' msbar to generate mutations in a genome in the ration of 3.6 million mutations in 42 million bases with the command:

cat <input> | msbar -filter -count 3600000 -point 1 > <output>

The process seems to be running but it has been running for over 8 hours, occupies about 150-180 Mb of memory but does neither reads nor write data:

$ pidstat -r -u -p 27115
Linux 4.15.0-20-generic 09/05/18    _x86_64_    (16 CPU)

16:56:09      UID       PID    %usr %system  %guest   %wait    %CPU   CPU  Command
16:56:09     1000     27115   20.04    8.62    0.00    0.09   28.66     5  msbar

16:56:09      UID       PID  minflt/s  majflt/s     VSZ     RSS   %MEM  Command
16:56:09     1000     27115  52497.86      0.00  361348  200704   0.41  msbar

Shall I just wait or has the program stalled completely?

Thank you

software error genome • 906 views
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I doubt anyone can offer a useful answer. Wait and watch is the best I can come up with.

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