failed to generate a circular plot which links collinear genes within a gene family with red curved lines using family_circle_plotter.java script in McscanX toolkit

Question

[annapragada.harika]

Hi, I am trying to use family_circle_plotter.java script in MCscanx to generate a circular plot which links all collinear genes within a gene family with red curved lines. I was able to generate a circular plot but with no red curved lines in it. could someone suggest the probable reason for it?

Answer 1

[annapragada.harika]

I am able to rectify this issue by changing the format of the gene family file which is actually a tab delimited file.