Similar samples in RNAseq
0
0
Entering edit mode
6.5 years ago
kanwarjag ★ 1.2k

I have a data set of 5 RNAseq samples and want to see which samples are close to stem cell population corresponding to one sample. What should be the best option to perform such analysis?

If I have to perform unsupervised clustering then will SD will be good parameter to select most variable genes?

Thanks
RNA-Seq • 1.0k views
ADD COMMENT •
0
Entering edit mode

Try @Kevin's guide for PCA plotting: PCA plot from read count matrix from RNA-Seq

ADD REPLY •
0
Entering edit mode

Have you looked at Pearson correlation between the samples of interest?

ADD REPLY •

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 2482 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6