Download all KEGG genomes

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6.5 years ago

Melinda • 0

Hi everyone,

I am looking for a way to download all prokaryotic kegg genomes. I found a post that had a very detailed answer on how to do the same with RefSeq, but with KEGG, it is a bit difficult, as it integrates multiple sources.

Cheers!

genome kegg bash • 1.6k views

ADD COMMENT • link 6.5 years ago by Melinda • 0

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Downloading all genomes without a KEGG subscription may violate their fair use policy. Something to consider.

ADD REPLY • link 6.5 years ago by GenoMax 147k

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Is it any different from downloading RefSeq and GenBank genomes? They link to those ftp's as sources.

ADD REPLY • link 6.5 years ago by Melinda • 0

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While KEGG can be accessed for free bulk downloads require purchase of a license, even for academic users. See the legal disclaimer . They only get a part of their funding from government (a problem afflicting more and more databases as time goes on) and depending on the license revenue for continued operation.

ADD REPLY • link 6.5 years ago by GenoMax 147k

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