how to use WGCNA to predict lncRNA targets?

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6.5 years ago

fanglujing ▴ 60

Hi, I found some lncRNA sequences from my RNA-seq results, and I want to find the lncRNA targets form the rest of RNA-seq results. I have 27 samples, so I use the WGCNA to predict lncRNA targets. I have already got some modules, but I have no ideas to do for the next step. Could you plz give me some suggestions if you had same situation before? Any useful suggestions would be appreciated.

WGCNA lncRNA • 1.7k views

ADD COMMENT • link 6.5 years ago by fanglujing ▴ 60

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Unless you're inducing the lncRNA's expression this isn't going to work. Why not look for a program that actually does lncRNA target prediction?

ADD REPLY • link 6.5 years ago by Devon Ryan 104k

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thanks for reply, these lncRNAs are come from RNA-seq result with expression information.

ADD REPLY • link 6.5 years ago by fanglujing ▴ 60

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I understood that already.

ADD REPLY • link 6.5 years ago by Devon Ryan 104k

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