How to perform KaKs_Calculator from SNPEff's output
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6.6 years ago
smallfish ▴ 10

Hi, all,

I have obtained the annotated SNP (VCF file) by SNPEff. How to calculate ka/ks using KaKs_Calculator or other programs.
RNA-Seq • 1.6k views
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  1. KaKs_Calculator requires sequences in the .axt format not SNPs.
  2. What is the goal of using KaKs_Calculator?
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