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6.5 years ago
bxia
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180
I have a table with 10000 htseq samples...the file size is 1.7Gb... how to analyze it with edgeR?
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With that many samples the performance isn't going to be great. I would suggest limma as a more performant alternative then.
Is this scRNAseq? That's about the only time you'd have so many samples.