CDS prediction for newly assembled transcripts
0
0
Entering edit mode
6.5 years ago
I0110 ▴ 160

I am using stringtie for a reference-guided transcriptome assembly. For all of the isoforms with novel junctions or other novel transcripts, how can I predict the potential CDS? Is there a tool available for this? Thanks!!!
RNA-Seq transcriptome Assembly CDS • 2.2k views
ADD COMMENT •
1
Entering edit mode

Transdecoder is popular for this purpose.

ADD REPLY •
1
Entering edit mode

more tools: Best command line ORF finder

ADD REPLY •

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 2910 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6