webserver of TCGA data www.tcgaportal.org

News:webserver of TCGA data www.tcgaportal.org

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6.5 years ago

xushutan ▴ 40

Hi everyone,

I build a website for manipulating TCGA data.

www.tcgaportal.org

You can use this server to visualize survival data in different cancers and cancer subtype samples, You can check gene expression in cancer subtypes, in Pan-cancer and normal tissues. You can also check the correlation between gene expression (RNA-seq) and methylation; gene expression and mutation (for now only in Kidney KIRC; other cancer data will be uploaded later).

Enjoy :)

genome RNA-Seq TCGA gene • 2.2k views

ADD COMMENT • link updated 18 months ago by Ram 44k • written 6.5 years ago by xushutan ▴ 40

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Please provide descriptive information about the portal. What distinguishes it from other TCGA data portals that are already out there (cBioPortal, LinkedOmics).

ADD REPLY • link 6.5 years ago by GenoMax 147k

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Thanks. A brief description is added.

ADD REPLY • link 6.5 years ago by xushutan ▴ 40

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LinkedOmics does a superset of the functionality offered here - almost all except pan cancer. What sets you apart? Disclaimer: I'm part of the LinkedOmics dev team.

ADD REPLY • link 6.5 years ago by Ram 44k

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Nice to meet you here. Yes, there are many servers for TCGA data. I also use cBioportal and OncoLnc. And your website looks well estabilshed too. Hope my server can do some help for bioinformatiers. Also, if anyone find errors or has recommendation on analyzing TCGA data, please leave comments.

ADD REPLY • link 6.5 years ago by xushutan ▴ 40

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