Installing Seurat for scRNA

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6.5 years ago

anu014 ▴ 190

Hello Biostars,

Can anyone tell how to escape this error encountered during installation of Seurat (https://cran.r-project.org/web/packages/Seurat/index.html)?:

command:  R CMD INSTALL httpuv  (httpuv is dependency for Seurat)
/usr/local/lib/R/etc/Makeconf:168: recipe for target 'callbackqueue.o' failed make: *** [callbackqueue.o] Error 1 ERROR: compilation failed for package 'httpuv'
* removing '/home/anupriya/R/x86_64-pc-linux-gnu-library/3.5/httpuv'

or how to disable package httpuv during installation, as I am installing on server so GUI is not supported?

Please suggest. Thank you. :)

rna-seq software error R • 2.8k views

ADD COMMENT • link updated 6.5 years ago by GenoMax 147k • written 6.5 years ago by anu014 ▴ 190

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looks like you're gonna have to troubleshoot the install of httpuv in order to get it to work. Sever vs. GUI shouldnt matter. Try installing the package alone, then start Googling all the error messages it throws

ADD REPLY • link 6.5 years ago by steve ★ 3.5k

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