Where to get genetic map build 38 ?

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6.5 years ago

hafiz.talhamalik ▴ 350

I need to run impute2 software.on human population data and for that i need genetic map of build 38. where can i get this ? I do have genetic map of build 37 but i need build 38

genome next-gen • 3.1k views

ADD COMMENT • link updated 3.6 years ago by Paravee • 0 • written 6.5 years ago by hafiz.talhamalik ▴ 350

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Hi. I know this question was posted years ago, but I'm trying to find genetic map of build 38 to use with SHAPEIT right now, so I want to know if you've ever got the answer?

ADD REPLY • link 3.6 years ago by Paravee • 0

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This was discussed in a past thread and the suggestion was to contact SHAPEIT authors: VCF file phasing by SHAPEIT

There are some recombination rates provided in locuszoom software. That may or may not be useful.

ADD REPLY • link 3.6 years ago by GenoMax 147k

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I will look them up. Thank you for your response!

ADD REPLY • link 3.6 years ago by Paravee • 0

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