Entering edit mode
6.5 years ago
kaurjaimeet911
▴
10
i am using this command
./interproscan.sh java -i /media/bioinfo14/a43692d0-92fd-4743-9947-ae3eb2ee0d80/triticina/Triticina_EffectorP.fa -t p -pa -f tsv -goterms -o /media/bioinfo14/a43692d0-92fd-4743-9947-ae3eb2ee0d80/triticina/interpro_result
after 25% completion. i got this error
select stepexecut0_.id as id1_90_0_, stepexecut0_.time_completed as time_com2_90_0_, stepexecut0_.time_created as time_cre3_90_0_, stepexecut0_.exception_first_chunk as exceptio4_90_0_, stepexecut0_.proportion_completed as proporti5_90_0_, stepexecut0_.time_started_running as time_sta6_90_0_, stepexecut0_.state as state7_90_0_, stepexecut0_.step_instance_id as step_ins9_90_0_, stepexecut0_.time_submitted as time_sub8_90_0_, exceptionc1_.step_execution_id as step_exe1_12_1_, exceptionc1_.exception_chunks as exceptio2_12_1_, exceptionc1_.chunk_index as chunk_in3_1_, stepinstan2_.id as id1_91_2_, stepinstan2_.bottom_model as bottom_m2_91_2_, stepinstan2_.bottom_protein as bottom_p3_91_2_, stepinstan2_.step_id as step_id4_91_2_, stepinstan2_.time_created as time_cre5_91_2_, stepinstan2_.top_model as top_mode6_91_2_, stepinstan2_.top_protein as top_prot7_91_2_, dependsupo3_.step_instance_id as step_ins1_93_3_, stepinstan4_.id as depends_2_93_3_, stepinstan4_.id as id1_91_4_, stepinstan4_.bottom_model as bottom_m2_91_4_, stepinstan4_.bottom_protein as bottom_p3_91_4_, stepinstan4_.step_id as step_id4_91_4_, stepinstan4_.time_created as time_cre5_91_4_, stepinstan4_.top_model as top_mode6_91_4_, stepinstan4_.top_protein as top_prot7_91_4_, parameters5_.step_instance_id as step_ins1_92_5_, parameters5_.parameters as paramete2_92_5_, parameters5_.parameters_key as paramete3_5_ from public.step_execution stepexecut0_ left outer join public.exception_chunk exceptionc1_ on stepexecut0_.id=exceptionc1_.step_execution_id inner join public.step_instance stepinstan2_ on stepexecut0_.step_instance_id=stepinstan2_.id left outer join public.step_instance_step_instance dependsupo3_ on stepinstan2_.id=dependsupo3_.step_instance_id left outer join public.step_instance stepinstan4_ on dependsupo3_.depends_upon_id=stepinstan4_.id left outer join public.step_instance_parameters parameters5_ on stepinstan4_.id=parameters5_.step_instance_id where stepexecut0_.id=? [42102-189]
InterProScan analysis failed. Exception thrown by StandaloneBlackBoxMaster. Check the log file for details
It says "Check the log file for details".
IF you can't find the logs, do
That should get you started
Upvoted and moved to a comment, since it doesn't answer OPs question (but indeed points OP potentially in the right direction).