CDS prediction for newly assembled transcripts
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6.5 years ago
I0110 ▴ 160

I am using stringtie for a reference-guided transcriptome assembly. For all of the isoforms with novel junctions or other novel transcripts, how can I predict the potential CDS? Is there a tool available for this? Thanks!!!
RNA-Seq transcriptome Assembly CDS • 2.2k views
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Transdecoder is popular for this purpose.

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more tools: Best command line ORF finder

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