Entering edit mode
6.5 years ago
bha
▴
80
I have SNPs data sets in PLINK format. I wanted to choose top 1000 only (based on p-value or some other order). I wonder, can i do this in PLINK? Or any other programme can do this SNP ranking? Any suggestion please?
Prune it based on LD, then run association, get top 1000 SNPs, then subset.