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6.6 years ago
sharmatina189059
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110
Hello all I am interested in developing and analysing compacted de-bruijn graph for a number of same genes from different strains. this link (https://github.com/Malfoy/bcalm) provides a algorithm for compacted de-bruijn graph.But I am unable to understand the input of this algorithm. Can anybody tell me other tools for same purpose. Please elaborate as I am new to this.
You may also consider using Bcalm2 (https://github.com/GATB/bcalm) instead of the original Bcalm. It is more actively developed / maintained, and performs better as well.
Can you please explain it little bit.