SubMap in GenePattern

Question

[sugus]

Hi there,

Is anyone use GenePattern and familiar with SubMap which used to compare expression data across two data.

I follow the instruction and made a label stating with 1 in 3rd line, and if there is any 0, the GenePattern will automatic add 1 to labels. However, I always get error to read cls file:

Error in if (min(as.numeric(cls)) == 0) { :

                missing value where TRUE/FALSE needed

Execution halted

The following is my cls file:

47 4 1 
# CTLA4-noR CTLA4-R PD1-noR PD1-R
1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 4 4

I don't know why there cannot derive True or False.... could anyone give me some help.

Thanks.

Thank you so much!