How to run RATT (Rapid Annotation Tool)

Question

[kaurjaimeet911]

Can't open perl script "/nfs/users/nfs_t/tdo/Bin/ratt/main.ratt.pl": No such file or directory

Sorry the reference file wasn't generated corretly.

[GenoMax]

Is that an actual error that is being produced when you run the tool? Did you install the program yourself? At a high level the perl script being referred to is either not present or the file location (path) is not accessible on compute node (if you are running this on a cluster).

[Mehmet]

As mentioned by genomax, please make sure you have installed RATT correctly. Later, I can guide you how to run RATT for annotation transfer, and please provide more information what command you have run with files.

Please also follow a very good tutorial by Avrilomics blog below:

RATT tutorial

[Thanujay S]

Hey! Did you try parsing to the path of the perl script?

Take a look at the following :

https://github.com/ThomasDOtto/ratt http://ratt.sourceforge.net/documentation.html

Answer 1

[mariagsolisquispe]

Hello kaurjaimeet911! I have the same error ... could you solve that problem? What steps did you follow, please? Thank you very much.