Entering edit mode
6.5 years ago
memohansingh
▴
10
Hello all,
I tried to plot circles in MCScanX. My input was
java circle_plotter -g ../ca_new.gff -s ../ca_new.collinearity -c ../circle_ca.ctl -o output_PNG_file
but it returns "Reading gff error: 1"
My gff file is as follows and they are tab separated
chr01 ca__132632 8387278 8390826
chr01 ca__128657 2092119 2098332
chr01 ca__129351 3143249 3149265
chr01 ca__132075 7329857 7365156
chr01 ca__134405 10484607 10489155
chr01 ca__138776 17819895 17825806
chr01 ca__142594 31455344 31457386
chr01 ca__145226 44039067 44041174
chr01 ca__145460 45086778 45090100
chr01 ca__127016 257848 263272
Somebody advice me how to tackle this issue.
Thanks a lot