Does Anyone Know Of A Publication Reviewing Snp/Indel Finding Algorithms For Ngs Data?
1
3
Entering edit mode
13.3 years ago
Travis ★ 2.8k

Hi all,

Is anyone aware of a good publication that reviews current methods for detecting SNPs/Indels from next gen sequencing data? I have done some searching but so far in vain. It would be great to get an overview of the various methods and their pros and cons.

Thanks in advance.

next-gen sequencing snp indel publication • 3.1k views
ADD COMMENT
7
Entering edit mode
13.3 years ago
Thomas ▴ 760

The following link is a very nice review of SNP calling from NGS.

enjoy

http://www.nature.com/nrg/journal/v12/n6/full/nrg2986.html

ADD COMMENT
1
Entering edit mode

Nice one - thanks!

ADD REPLY
1
Entering edit mode

If you want details of the algorithms behind a specific tools keep an eye on: https://github.com/lh3/smtl-paper. That's the incoming samtools paper.As you know, one of the most used tools for, among other things, calling snps with nextgen data.

ADD REPLY
0
Entering edit mode

@drio - I think this paper is out now: http://www.ncbi.nlm.nih.gov/pubmed/21903627

ADD REPLY

Login before adding your answer.

Traffic: 2499 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6