Homer motif analysis

Question

[mikysyc2016]

Hi, When i use homer to do motif analysis, i will get known results and de nove results. which one you will put into your project as the motif analysis results? Thanks!

[Mehmet]

You can add two results separately;

1. Known motifs
2. Novel or candidate motifs.

[mikysyc2016]

Which one you will put into your paper as motif analysis results?

[Benn]

See comment of Mehmet, both. If you write a paper, you're the one that decides what gets in there and what not.