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6.6 years ago
hosin
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I have some coordinates ( like: chr24:40902129-41709809, chr25:11035146-11097889) and genes from Oar_v4.0.gtf (sheep) in this coordinates. How I can find exones and pathway. I need the fastest and newest methods by shell or .... Thanks.
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- For exons, intersect coordinates with gtf file (use bedtools)
- For pathways, try online services with genes of interest (for eg kegg, david, biomart)
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6.6 years ago by
cpad0112
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