Question

Metabolic Pathways From KEGG.

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6.4 years ago

waqarlodhi93 • 0

How can I download metabolic pathways of all strains related to particular organism from KEGG?

assembly KEGG pathway • 1.4k views

ADD COMMENT • link updated 20 months ago by Ram 44k • written 6.4 years ago by waqarlodhi93 • 0

score 0 · Answer 1 · 2018-06-29

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6.4 years ago

EagleEye 7.6k

With GeneSCF you can try to download one strain at a time using 'prepare_database' module (with database parameter -db=KEGG). Its output contain pathways --> genes relationship.

Example

ADD COMMENT • link 6.4 years ago by EagleEye 7.6k