Can I combine Blastp and interproscan results for GO annotation in blast2go

Question

[aishu.jp]

I have local Blastp results of 10000 protein sequences as xml files and I have completed interproscan analysis using the gene sequences of the same 10000 proteins in Blast2go.

My query is Can I load the Blastp xml files and interproscan results in Blast2go for mapping and GO annotation in Blast2go?

Answer 1

[lieven.sterck]

as long as the blastP xml output is compliant with what blast2GO expects and you blasted against a supported blast2GO DB (uniprot?) it should work yes