ASPLI (RNAseq AS) R package error

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6.4 years ago

dina.hesham139 ▴ 170

Hi,

I'm using ASPLI (An integrative R package for analysing alternative splicing) to study RNAseq data. Whenever I try to load the bam files I get this error:

Error in value[[3L]](cond) : 
'Realloc' could not re-allocate memory (167772160 bytes)
  file: WT_C1.bam
  index: NA

Any help how I can fix this?

RNA-Seq R ASPLI • 1.5k views

ADD COMMENT • link updated 6.4 years ago by Ram 44k • written 6.4 years ago by dina.hesham139 ▴ 170

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Please use the formatting bar (especially the code option) to present your post better. I've done it for you this time.
code_formatting

ADD REPLY • link 6.4 years ago by Ram 44k

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What is BAM file size and your system RAM?

ADD REPLY • link 6.4 years ago by pbpanigrahi ▴ 430

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bam files ranges 6-8gb. I analyze 2 at a time

I used windows at first of 8gb RAM.

Then I analyzed the data using a macbook pro 256, 2.3 GHz, 8 GB RAM. Also, gave me a memory error!

ADD REPLY • link 6.4 years ago by dina.hesham139 ▴ 170

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