Annotation File for Enchancer Regions in Ensembl mm10 genome

Question

[hkarakurt]

Hello everyone, I analyzed a ChIP-Seq Data (H3K4me1 and H3K27ac) and I need an enhancer annotation file (GFF/GTF) to use in SeqMonk. Is there any annotation file for enhancers?

Thank you.

[ATpoint]

Enhancers are highly cell type specific regulatory elements. No, there is no simple consensus list that you can download. But as you have ChIP-seq data, you could use MACS2 to call peaks for both datasets and take the intersect as putative enhancer regions. This you then can write into the GFF format.