Entering edit mode
6.6 years ago
user_g
▴
20
Hello, I have the following data which I want to plot on Rcircus and link them.
srcTName srcTStart srcTEnd SeqNames Start End
1 Hchr18 657287 658525 Mchr5 30072897 30073562
2 Hchr18 830267 830721 Mchr5 32594399 32594708
3 Hchr18 903627 905104 Mchr17 93198252 93199733
4 Hchr18 2571338 2571954 Mchr17 71526682 71527049
5 Hchr18 2654877 2655933 Mchr17 71475296 71476291
6 Hchr18 2654877 2655933 Mchr1 18058862 18059032
The H represents Human chromosome, while M represents Mouse chromosome. I want to draw the link between the elements of each row, for example link between Hchr18 657287 to Mchr5 30072897.
I always get this error:
Error in RCircos.Validate.Genomic.Data(genomic.data, "link",
genomic.columns) : One or more genomic position in plot data is
outside of chromosome length for Mchr5.
I got the mapped coordinates using pslMap, I also checked the coordinates manually and they are fine so I do not know why I am getting this error.