Entering edit mode
6.3 years ago
xieshaojun0621
▴
210
In the file I downloaded here (ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/bacteria/assembly_summary.txt ), there are two columns: taxid and species_taxid
What's the difference between these two columns?
Some of the lines these two columns are different: 391008 40324 Stenotrophomonas maltophilia R551-3
Some of them they are the same: 562 562 Escherichia coli
40324
- gives you allStenotrophomonas
species.391008
- gives you the specific strain.561
isEscherichia
spp562
isEscherichia coli
but those appear to be used interchangeably in that file.You can check using the NCBI Taxonomy browser here.