Entering edit mode
6.3 years ago
afli
▴
190
Hi, do anybody know how to calculate the false positive rate(fpr) of JASPAR motifs? Or, do anybody know where to download the fpr files? For example, the fpr should look like this:
MOTIF 0.005 0.001 0.0005 0.0001 5e-05 1e-05
MA0002.2.RUNX1 2.8725 6.6975 8.04 10.693 11.679 13.42
MA0003.3.TFAP2A 1.68 6.3075 7.885 10.761 11.8655 13.5495
MA0004.1.Arnt 3.093 5.2725 7.35 10.3271973427 10.3271973427 10.3271973427
MA0006.1.Ahr::Arnt 3.9075 6.2295 8.6555 10.2222885869 10.2222885869 10.2222885869
MA0007.3.Ar -9.65 -2.532 0.145 5.7055 7.819 12.151
MA0009.2.T -7.519 -0.7165 1.7735 6.7655 8.632 12.432
MA0014.3.PAX5 2.7485 6.3335 7.6395 10.4755 11.461 13.449
MA0017.2.NR2F1 -7.1505 0.3285 4.767 10.6335 11.974 14.1845
MA0018.3.CREB1 2.096 5.863 7.2655 10.328 11.169 13.799
MA0019.1.Ddit3::Cebpa 2.644 6.4005 7.831 10.648 11.6445 13.533
MA0024.3.E2F1 -0.4225 4.974 6.853 10.333 11.5615 13.887
Thank you very much! Looking forward to your reply!
Thank you ATpoint for your kindly modifying the data format. I've got the answer in https://groups.google.com/forum/#!category-topic/rgtusers/general-discussion--rgt-core-classes/6ioEaNXEeeA.