How to get false positive rate of JASPAR motifs
0
0
Entering edit mode
6.3 years ago
afli ▴ 190

Hi, do anybody know how to calculate the false positive rate(fpr) of JASPAR motifs? Or, do anybody know where to download the fpr files? For example, the fpr should look like this:

MOTIF   0.005   0.001   0.0005  0.0001  5e-05   1e-05
MA0002.2.RUNX1  2.8725  6.6975  8.04    10.693  11.679  13.42
MA0003.3.TFAP2A 1.68    6.3075  7.885   10.761  11.8655 13.5495
MA0004.1.Arnt   3.093   5.2725  7.35    10.3271973427   10.3271973427   10.3271973427
MA0006.1.Ahr::Arnt      3.9075  6.2295  8.6555  10.2222885869   10.2222885869   10.2222885869
MA0007.3.Ar     -9.65   -2.532  0.145   5.7055  7.819   12.151
MA0009.2.T      -7.519  -0.7165 1.7735  6.7655  8.632   12.432
MA0014.3.PAX5   2.7485  6.3335  7.6395  10.4755 11.461  13.449
MA0017.2.NR2F1  -7.1505 0.3285  4.767   10.6335 11.974  14.1845
MA0018.3.CREB1  2.096   5.863   7.2655  10.328  11.169  13.799
MA0019.1.Ddit3::Cebpa   2.644   6.4005  7.831   10.648  11.6445 13.533
MA0024.3.E2F1   -0.4225 4.974   6.853   10.333  11.5615 13.887

Thank you very much! Looking forward to your reply!

JASPAR fpr false positive rate calculation • 1.1k views
ADD COMMENT
0
Entering edit mode

Thank you ATpoint for your kindly modifying the data format. I've got the answer in https://groups.google.com/forum/#!category-topic/rgtusers/general-discussion--rgt-core-classes/6ioEaNXEeeA.

ADD REPLY

Login before adding your answer.

Traffic: 2153 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6