Question

How export HOG viewer tree with orthologs in OMA

0

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6.3 years ago

anusblat • 0

Hi everybody,

Do you know how I can export HOG viewer tree with orthologs in OMA? Using the web interface?

Thanks,

Alejandro

OMA Orthologs oma ortholog • 1.4k views

ADD COMMENT • link updated 6.3 years ago by Christophe Dessimoz ▴ 740 • written 6.3 years ago by anusblat • 0

score 1 · Answer 1 · 2018-08-05

1

Entering edit mode

6.3 years ago

Christophe Dessimoz ▴ 740

What do you mean by "exporting"? You can run the HOG viewer (which we now call "iHam") on your own OrthoXML file (e.g. exported from the OMA browser, or produced by OMA standalone) using the following code:

https://github.com/DessimozLab/iHam

Does this answer your question?

ADD COMMENT • link 6.3 years ago by Christophe Dessimoz ▴ 740