SNP matrix to a nice phylogenetic tree

Question

[roy.granit]

Hi All,

I have matrix with SNP calling for several positions in 6 bacterial genomes relative to a ref. sample. (generated using snippy)

For example:

gene       position   wt   sample_1     sample_2 ...
nm_1234    123        A      C              T
nm_1234    129        G      T              A

Now my goal is to find the distance between the different species and display it on a nice plot like this :

Any suggestions on hoe to approach this? Thanks!

[GenoMax]

Past threads that may be useful:

• How To Construct Phylogenetic Tree Using Snps
• Binary SNP matrix into APE (R)
• How To Make A Phylogenetic Tree From A Binary Matrix
• Multi-Sample Vcf To Phylogenetic Tree.

[roy.granit]

Thanks. I was able to use FastTree to convert the data into Newick format, now I need to find a way to plot it was nicely as in the figure.. would be happy to receive suggestions

[roy.granit]

After creating Newick file ,I used Dendroscope to create the "radial" plot