circos plot to compare genomes plot

Question

[Ric]

Hello, How to generate circos plot in order to compare genomes?

Thank you in advance,

[WouterDeCoster]

What have you tried?

People will be more eager to help if you show your effort you put into this question, and what didn't work. Then we can point out mistakes and put you back on track. Don't expect a full manual here on how to do it.

Answer 1

[Andrewoods]

Maybe you want to try shinyCircos. It's an interactive APP. https://github.com/venyao/shinyCircos http://shinycircos.ncpgr.cn/

[Ric]

Thank you, but do you have any scripts how to generate the input files for it?

Thank you in advance

[Andrewoods]

Example input data of shinyCircos are provided here: https://github.com/venyao/shinyCircos/tree/master/example_data.

You need to use data processing tools like Excel, R, shell, etc. to prepare the input data with your raw data.

You can also check this link https://github.com/venyao/shinyCircos/issues/3