How to do peak correlation in m6A

Question

[siqizhao2018]

How to do peak correlation in m6A?Have Cancer and normal sample,but I have no idear to Make relevant with that。

[afli]

Hi, do you have raw counts of every peak? The DESeq2 workflow may help you to correlate Cancer and normal sample(In section 4.3 Sample distances, http://master.bioconductor.org/packages/release/workflows/vignettes/rnaseqGene/inst/doc/rnaseqGene.html). Besides, you can also try to use corrplot package in R, but you may have to normlize your count data, and use log2(count+1) to tranform the data.

Hope this will help you. Aifu.

[siqizhao2018]

thank you! Yeah,In count I know how to do that,but I want to find some information in peak thinking~