Reactome Pathway Analysis Error

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6.3 years ago

ulapei ▴ 20

Hi,

I am trying to perform Pathway Analysis using ''Reactome PA'' package. The results I get do not include any Enriched Terms, even though it is clear that there should be some sort of associated between the pathways the genes are involved in. Whenever I try to view the data frame that contains the Reacome Analysis data, I get the error:

Error in if (more || nchar(output) > 80) { : missing value where TRUE/FALSE needed

I use the list of differential genes - Entrez Gene IDs - in the Excel file that I use for the analysis.

Thanks!

reactomepa pathway analysis error bioconductor • 1.6k views

ADD COMMENT • link 6.3 years ago by ulapei ▴ 20

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Please add the code you use.

ADD REPLY • link 6.3 years ago by WouterDeCoster 47k

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Do you figure out the problem? I also get the same problem when I try to see view the data frame that contains the results of my running model when using mgcv packages.

ADD REPLY • link 5.9 years ago by linlizi • 0

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