maftools - no chromosomal coordinates
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6.3 years ago

I have a file of genes and alterations but there are no chromosomal cooridinates associated with those alterations. Can I used maftools on this file. Here is the first line of the file that I have

Tumor_sample_Barcode    gene    alteration      type    mut_type
200_B                   NF1     D724N           SNV     missense

Thanks in advance

R SNP Bioconductor • 1.2k views
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Please read the manuals for maftools, find out what is the input, and adapt your input, then see if you still have problems.

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Please use the formatting bar (especially the code option) to present your post better. I've done it for you this time.
code_formatting

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