Entering edit mode
6.2 years ago
changhan1110
•
0
Hi,
I have tough time with NanoOK tutorial. I stuck with a JAVA nullpoint error at extract stage.
/BiO/Test/Program/NanoOK/nanook_ecoli_500$ nanook extract -s N79596_dh10b_8kb_11022015/
NanoOK v1.35
Comments/bugs to: richard.leggett@earlham.ac.uk
Follow NanoOK on twitter: @NanoOK_Software
Scripts dir: /BiO/Share/Tool/NanoOK/bin
Checking dependencies
R scripting front-end version 3.0.2 (2013-09-25)
pdfTeX 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian)
h5dump: Version 1.8.20
Making directory /BiO/Test/Program/NanoOK/nanook_ecoli_500/N79596_dh10b_8kb_11022015/fasta
Checking FAST5 directory structure...
Using pass/fail dirs: yes
Using batch dirs: no
Using barcodes: no
Exception in thread "main" java.lang.NullPointerException
at nanook.ReadProcessor.process(ReadProcessor.java:252)
at nanook.NanoOK.process(NanoOK.java:352)
at nanook.NanoOK.main(NanoOK.java:401)
Does anyone know how to fix it?
Thanks for your help in advance.
Changhan
Have you tried:
Yes, I sent him an E-mail yesterday. He didn't reply yet.
YESTERDAY?!? That's not an unreasonable long period of waiting you went through! Please have a bit more patience with people developing free software.
I know right, but I want to solve the problem as soon as possible. While reporting error, I wondered if someone had same kind of problems or troubleshooting experience, so I posted this.
That's a valid strategy, but you should also mention when you create the post that you've sent an email, are waiting for a response and in the meantime and trying to check if others have faced similar problems.
On a related note, the only tag you've used in
software error, which is extremely vague and will not popup in a search by tag such asNanoOK. Don't you think it would help your case if you had added more relevant, specific tags?OK, thanks for your note. I edited the post.