--condition-list "file" by plink

Question

[khn]

Hello,

I am conducting conditional analysis, using --condition-list "filename"

The file includes

rs1234
rs3456

Then, it shows

--condition-list: 0 of 2 variant IDs loaded from "filename"

Besides variant ID number, what should be listed in the file so that all variants could be loaded for the analysis?

Thank you!

Answer 1

[chrchang523]

Have you verified that those variant IDs are actually present in your main dataset?

[khn]

Thank you! I merged the files from chromosome 1-22 and conducted again. Then it worked. Thank you Chrchang523!