What is common source of DNA- methylation raw data read files?

Question

[ak259369]

I am new bie in DNA methylated world and looking for general source for raw data read files for applying to some methylation analysis tools. Please help me by sharing the link for that.

Thanks

Answer 1

[GenoMax]

Sequence data (including DNA-methylation) can be found in two public repositories. NCBI SRA and EBI-ENA.

Answer 2

[Charles Warden]

You can also deposit SRA data (the raw .fastq.gz files) through GEO, to have linked processed data sets.

I'm not sure if you are looking for a specific type of BS-Seq data, but there is also microarray DNA Methylation data in GEO (Illumina Array, MeDIP, etc.).

For arrays, you can search for specific platforms within GEO: https://www.ncbi.nlm.nih.gov/geo/browse/

Otherwise, the platform is probably the sequencing technology; so, you would want to search for "BS-Seq," "RRBS," etc among the data sets: https://www.ncbi.nlm.nih.gov/geo/