Tools to analyse DNA methylation sequencing data?

Question

[ak259369]

I am M.Sc Student an working on project for Bisulphite sequecning data analysis(DNA Methylation). Can some one pls share some most commonly/famous used tools in this field?

[Devon Ryan]

Common tools for which steps? Have you searched for any? You'll find that if you flip through the methods section of a couple papers you can pretty quickly get an idea what tools are popular (not that that necessarily makes them better).

[WouterDeCoster]

See also the Bisulfite sequencing section on omictools

Answer 1

[cschu181]

Bismark, Bicycle, gemBS, BSeeker