I want to create a genome diagram of a virus. I would like to show the name and position of the genes. I found there is a package called Genome Diagram in Biopython which can do that. But I was not able to use if because of the dependency issues also I am not very good at Python.
Is there any package in R/Bioconductor that would let me create genome or plasmid diagrams if I supply nucleotide position as input ?
Hey, hello! Just found this thread, I'm a bit late to the party. Am trying to annotate gene clusters that encode for antagonistic compounds in S. xylosus, and have this cute little cluster that I'm trying to represent for my PhD chapter. I'm checking your commands cause I'm kind of struggling with the molecule command and I wonder where in my system I could find the hoarc dataframe with this detailed info. If you still remember about this stuff, please kindly let me know!
Look at genPlotR, Sushi or karyoplotteR.
Thank you. I will check them.