any tool t make plots from blast output

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6.2 years ago

Mehmet ▴ 820

Dear All,

I was wondering if there is a tool to generate plots to show blast hits or not.

gene alignment genome • 2.2k views

ADD COMMENT • link 6.2 years ago by Mehmet ▴ 820

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can you elaborate what exactly you're looking for?

Something like the graphical view from the blast page at NCBI?

ADD REPLY • link 6.2 years ago by lieven.sterck 15k

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I would like to show matches (query and subject) with matching starting and ending points. I did tblastn for a genome and a proteome data. and I did blastp. In two blast runs I used local database that I generated.

Any graph will be nice to show those matches; dot plot of scaffolds and proteins in tblastn output, and protein to protein in blastp output.

ADD REPLY • link 6.2 years ago by Mehmet ▴ 820

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am not very sure, if this will help you. But you can have a look at circoletto

ADD REPLY • link 6.2 years ago by karthic ▴ 130

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