How to create "trait data" file for WGCNA

Question

[vuductp]

B1  B2  B3  L0_1    L0_2    L0_3    W0_1    W0_2    W0_3    L30_1   L30_2   L30_3   W30_1   W30_2   W30_3

B1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 B2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 B3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 L0_1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 L0_2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 L0_3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 W0_1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 W0_2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 W0_3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 L30_1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 L30_2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 L30_3 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 W30_1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 W30_2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 W30_3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

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I followed this link and created my Traitdata but it seems doesn't to my expectation Solved (How to create "trait data" file for WGCNA ). Could anyone please give me a help? I highly appreciate.

P/S: Since this is the first time I use the website, I am not so sure whether this post is in suitable form or not, please kindly let me know. Best regards Amber

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Answer 1

[Kevin Blighe]

Please follow the tutorial, in which you will find out how to use real and also create simulated trait data:

• Tutorials for the WGCNA package

Note sections II and III.

Kevin