Entering edit mode
6.2 years ago
sujasubramanian
▴
70
I want to create Tissue specific promoter motifs , it should be look likes in the below format:
chro no start end orientation motif pvalue ..etc.'0' indicates the motif is absent in the tissue
i am new to biological databases from where i get the (promoter motifs details tissue specific details)
chrY 12883 12897 - CCACCAGAGGGCCT 4.4989e-06 517 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
All tissues share the same DNA, so the same motifs are present. What exactly do you mean with tissue specific?
More details are needed. From where (which software or database) did you get this line ? What is the complete header of this line ? What do you really want in details ?
actually i want to study the TF binding specificity, whether its surrounding plays a role or not? its from MEME i guess, but i tried to recreate the same but i fail, There is no header at all, I put header on it.