from which database givesTissue specific promoter motifs
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6.2 years ago

I want to create Tissue specific promoter motifs , it should be look likes in the below format:

chro no start end orientation motif pvalue ..etc.'0' indicates the motif is absent in the tissue
i am new to biological databases from where i get the (promoter motifs details tissue specific details)

chrY    12883   12897   -   CCACCAGAGGGCCT  4.4989e-06  517 0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0
sequence alignment • 925 views
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All tissues share the same DNA, so the same motifs are present. What exactly do you mean with tissue specific?

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More details are needed. From where (which software or database) did you get this line ? What is the complete header of this line ? What do you really want in details ?

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actually i want to study the TF binding specificity, whether its surrounding plays a role or not? its from MEME i guess, but i tried to recreate the same but i fail, There is no header at all, I put header on it.

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