Hi,
I used MACS2 to call the peaks of three different ChIP samples. I have 3-bed files which I want to visualize.
I am trying to generate "Average Profile of ChIP peaks binding to TSS region" plot from ChIPseeker. Though I am able to generate three different "Average Profile of ChIP peaks binding to TSS region" plots for each bed file but, I want to generate one figure with will be having peaks of 3 bed files. In short I wanted to merge my three plots in one PNG.
I want to generate something like this: https://drive.google.com/file/d/1uGscEzuqmASboDLABGI2TcDdIWw3-b5B/view?usp=sharing
Any kind of help will be great. looking forward to hearing back from you. Thanks in advance Swadha
well HOMER has everything what you need. merge peaks from all the files and calculate enrichment over merged files.
Thanks for getting back. I will definitely look into HOMER's kit