Find chromosome number

Question

[bulbul]

How to find out the chromosome position of each sequence of the sample?

Thanks in advance

Sequence    CloneID Chromosome  ChromosomePosition
TGCAGTTATTTGGCTCATCGTCGTATTGCAAGTTTCTGACATCGCTGTACACTGTTGACGTCGCCGAGA   1106145|F|0 contig103705_ln_2374_nr_121_    2005
TGCAGGGCCGCCATGCCACCGAGTCTGGCGTGATCAAAGGTTCTATCTCGCTGAAACCCAGCAGCATGC   1129425|F|0     0
TGCAGCATGCCCACTACCGGTGTCGCCACCACCAGGAGACCATCGCTGCACCACCTTGACCTCGAGGGA   2291218|F|0 contig498398_ln_1385_nr_68_ 856
TGCAGGAGGCTAACCCGCCCCTTGCCGCTTGCGACCGAGCAGCGTCGACTGCCGAGATCGGAAGAGCGG   1132446|F|0 contig137613_ln_2176_nr_31_ 1949
TGCAGATCTTCTGTGCAAGGGACATTTTGCTGGTATGAGGAGACGTGGCCGAGATCGGAAGAGCGGTTC   1091859|F|0     0
TGCAGCAAACAGCTAGGGATTGGAGGTTGGATCGAGCAGCGGTGTGTCACCATGGGGTGGAAGCAGGCG   2261700|F|0     0
TGCAGCGCCAAATAGGAAATCCCTCGATCCCGTGACCTCCGAGATCGGAAGAGCGGTTCAGCAGGAATG   3023908|F|0     0
TGCAGTTGCTCACAGCTACGCGCGGCCCGCCGCTGCCAGACTTGCCTGCGCGCCGCCGCTATAAGCGGT   1865033|F|0     0
TGCAGGAAAACCATTGGCAGAAGAAAGGAAATGCCGTGCATGATTAATTACAAGTTACTTTGACAACAT   1099562|F|0 contig281739_ln_1723_nr_39_ 274
TGCAGTATGAATGGGTGCACTGTGAATTGGTGGTTTTGTAGGTTACCTTCCGAGATCGGAAGAGCGGTT   1126109|F|0 contig365276_ln_1565_nr_26_ 104
TGCAGCCACTTGTGGCCCTTGGATGTCGTCGCTATAGAGGTCGAGGTACTTGACGGCGAGATGATGTGG   2253584|F|0     0
TGCAGTACATGCATGTCAGAATTATCATCATGCGAGCTCAAGTATAGACTGTGTAGTCAAGCACTGCGA   1046540|F|0 contig349609_ln_1590_nr_20_ 409
TGCAGCGACAGAGATGGCCTGTGCCTGCCTCGTCTTGAACTCGACCATCCTATTAACGCCCGAGATCGG   100012515|F|0   contig129313_ln_2223_nr_42_ 1600
TGCAGGGAGCCGTCGCGCAGCAGCTGGAGCGCGCGTTCGCGGCGAACGAGCCTTCCGACGACTCAGCGT   1209933|F|0     0

[Jean-Karim Heriche]

Please choose the correct tag. This is a regular question, not a job advert. For now, I've changed it for you.

[Jean-Karim Heriche]

What about aligning the sequences to the reference genome of your choice ?

[zx8754]

Maybe related post:

• Using R to "NCBI Blast" query DNA sequence automatically, many sequences to do

Answer 1

[rse]

You can perform NCBI-BLAST or do UCSC BLAT