unable to fetch bam file
0
0
Entering edit mode
6.1 years ago
sw ▴ 10

hello there,

When I was trying to open a bam file on JBrowse, it kept showing 'unable to fetch'. I checked several times to ensure my bam file and bai file in correct position. I think it is about my system because the same file can be shown on other JBrowse. But I can not figure it out on this JBrowse. Does anyone have any idea? Thanks in advance.

Best

RNA-Seq • 1.5k views
ADD COMMENT
1
Entering edit mode

I commented the command to load magic_mime module in httpd.conf and then restarted httpd. It worked. Thanks a lot.

ADD REPLY
0
Entering edit mode

Different Apache server ?

From this thread

ADD REPLY
0
Entering edit mode

thanks for your reply. I tried to add 'AddType application/octet-stream .bam .bami .bai' into .htaccess file. But the same error occurred. Did I miss any other step?

ADD REPLY
0
Entering edit mode

If you think it is about your system, don't you think it would be helpful if you provide information about your system? Such as operating system, Apache version, JBrowse version. Are you self hosting JBrowse, or the server is another computer?

ADD REPLY
0
Entering edit mode

Yeah. I ignored that.

ADD REPLY

Login before adding your answer.

Traffic: 1752 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6