IGV/IGB add two lines in a track
1
0
Entering edit mode
6.1 years ago
r.beeloo • 0

Background

We want to visualize two lines (which can overlap) in the same track for visualization purposes. We can show them separately using the wiggle format, like so:

variableStep chrom=chr2
300701 12.5
300702 12.5
300703 12.5
300704 12.5
300705 12.5

However we couldn't figure out whether it is possible to show two lines in the same track in IGV/IGB. This simply because a lot of tracks underneath each other make it hard to see patterns when needing to scroll up and down.

Question

Can two line plots be visualized together in a single track? If so, what would this file format look like

IGV IGB wiggle • 2.1k views
ADD COMMENT
0
Entering edit mode
6.1 years ago
morovatunc ▴ 560

Hi.

For bigwigs, I think you can use IGV's Overlay Tracks function.

So select your tracks, right click and choose Overlay Tracks from right click menu.

These are the screen shots. https://ibb.co/nQsmWL https://ibb.co/kUB25f

Hope this helps,

Tunc.

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